PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676726414
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 266aa    MW: 28915.9 Da    PI: 5.8307
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676726414genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002191113123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++C + F ++  L  H++ H
  676726414  91 FSCNYCQRKFYSSQALGGHQNAH 113
                89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.1E-687118No hitNo description
PROSITE profilePS5015711.42791118IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MRPILDLEVE ASSEHDHYSD SNSSQVASNL SPVGDDYRPI SLNLSLCFNN NNNNLDLESS  60
SLTRPISSTS ESSNPEQQQQ QQQPSVSKRV FSCNYCQRKF YSSQALGGHQ NAHKRERTLA  120
KRAMRMGLAG VFPGRGSSSS YTAAATAAAL SCLPLHGSGN GNMTSFRTLG IQAHASTHDL  180
GVTRPTPETI IRNIARFNQG YFSNCVPFFV EDDDAELLWP GSFRQAAGAV AAEVGHDNLG  240
ESNVDFLEVK QAVDMESSLP DLTLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013676695.11e-147PREDICTED: zinc finger protein 4-like
RefseqXP_013676694.11e-147PREDICTED: zinc finger protein 4-like
RefseqXP_009127467.11e-147PREDICTED: zinc finger protein 4-like
RefseqXP_009127466.11e-147PREDICTED: zinc finger protein 4-like
SwissprotQ392631e-129ZFP4_ARATH; Zinc finger protein 4
TrEMBLM4FF781e-147M4FF78_BRARP; Uncharacterized protein
STRINGBra039750.1-P1e-147(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66722643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.11e-116zinc finger protein 4